species:   Scscl
pid:       PID1762
parent:    Ssc-milR-238
paralog:   
locus:     NW_001820825.1:949647-949737
matures:   ['UAUUGCAGAGAGAAUUGAUAGA', 'UAUCAUGGUUUGUCUCUGACU']
srr:       SRR12527898
genome:    /Users/jax/+Genomes/Fungal_genomes/Scscl.GCF_000146945.2_ASM14694v2.fa
alignment: /media/data/njohnson/+SeqLibraries/FunHP_libraries/Xia2020-rh.SRR12527898.cram
call:      samtools view /media/data/njohnson/+SeqLibraries/FunHP_libraries/Xia2020-rh.SRR12527898.cram NW_001820825.1:949647-949737

7 out of bounds
10 alignments
8 proper strand
6 stranded perfect matches

**********************                                             ************************
CUAUCAUGGUUUGUCUCUGACUCCAGUCGCUUAUUACCCUUCAAAACAGAGUGGAAGAUGUCGAGGAAGUAUUGCAGAGAGAAUUGAUAGA
((((((..((((.(((((((((((..(((..((((..(((((......))).))..)))).))))).)))....)))))))))))))))).
---------------------------------------------------------------------UAUUGCAGAGAGAAUUGAUAGA l=22 a=4 c
-UAUCAUGGUUUGUCUCUGACU--------------------------------------------------------------------- l=21 a=0 c*
---------------------------------------------------------------------UAUUGCAGAGAGAAUUGAUAGA l=22 a=4 ma
-UAUCAUGGUUUGUCUCUGACU--------------------------------------------------------------------- l=21 a=0 ma*

---------------------UCCAGUCGCUUAUUACCCUUa------------------------------------------------- l=21 a=1 
----------------------------------------UCAAAACAGAGUGGAAGAUGUC----------------------------- l=22 a=1 
---------------------------------------------------UGGAAGAUGUCGAGGAAGUAU------------------- l=21 a=1 
----------------------------------------------------------UGUCGAGGAAGUAUUGCAGAGAa---------- l=23 a=1 
---------------------------------------------------------------------UAUUGCAGAGAGAAUUGAUAGA l=22 a=4 (c,ma)

mb-01011
ax-1011011
ku-01
ss-111110111100
fn-101
